Sarah Cobey
Principal Investigatorcobey@uchicago.edu

Sarah is a professor in the Department of Ecology & Evolution at the University of Chicago.

Lauren McGough
Postdoctoral Researchermcgough@uchicago.edu

Lauren studies how the mechanisms and dynamics of affinity maturation in the adaptive immune system affect the diversity of individuals' antibody repertoires.

Marcos Vieira
Senior Research Scientistmvieira@uchicago.edu

Marcos studies the rapid evolution of B cells during the immune response and how this short-term evolution is enabled by the long-term evolution of immunoglobulin genes. He’s also interested in how immune history shapes the evolution and epidemiology of influenza and other antigenically diverse pathogens.

Patrick McChesney
Senior Research Scientistmcchesney@uchicago.edu

Patrick works on models of the longitudinal dynamics of individual-level trends and vaccine effectiveness in influenza and SARS-CoV-2 and develops experimental designs for epidemiological panel studies.

Manon Ragonnet
Research Scientistmanonragonnet@uchicago.edu

Manon studies the transmission and evolution of RNA viruses, through the analysis of their genetic data. Her previous work focused on elucidating HIV transmission dynamics in the UK and sub-Saharan Africa. Currently, she is integrating phylogenetic analysis into models forecasting the next flu and SARS-CoV-2 variants.

Alex Byrnes
Senior Research Programmerabyrnes@uchicago.edu

Alex furthers the lab's reproducibility and reusability initiatives, and serves as digital lead. He has worked on national-level transparency and data projects since 2013 and software since the early aughts.

Christopher Joel Russo
PhD Studentcjrusso@uchicago.edu

Christopher studies the germline adaptive evolution of the naive antibody repertoire and of the immunoglobulin alleles.

Alonzo Finch
Research Assistantalonzo.finch@uchicago.edu

Alonzo is assisting in modeling influenza infection using epidemiological and molecular data at both the national and regional levels. He is working on seeing how the size of previous influenza seasons can influence those that come later. He is currently a fourth year in The College at the University of Chicago studying Statistics.

Alumni

Spencer Carran, Research Scientist (2020), currently a biologist with the US FDA
Diana Vera Cruz, Research Scientist (2020 to 2022), Bioinformatician for the Center of Research Informatics at the University of Chicago
Katie Gostic, Research Scientist (2019 to 2022), Team lead at the CDC's Center for Forecasting and Outbreak Analytics
Qifang Bi, Postdoctoral Researcher (2020 to 2022), currently working on business strategy for BCG in Washington, DC
Phil Arevalo, Research Scientist (2017 to 2022), Assistant Professor of the Practice in Biology and CIS at Wesleyan University
Rachel Oidtman, Postdoctoral Researcher (2020 to 2022), currently a senior data scientist at Colorado Access
Dannie Griggs, Research Assistant (2020 to 2021),
Elena Whitney, Research Assistant (2020 to 2021), medical student at U. Chicago
Kangchon Kim, Postdoctoral Researcher (2017 to 2020), transitioning to research science in Washington, D.C.
Ed Baskerville, Senior Research Programmer (2013 to 2019), now saving the internet from corporate domination
Frank Wen, PhD Student (2015 to 2018), now completing medical residency at U. Chicago
Sylvia Ranjeva, PhD Student (2014 to 2018), currently a medical resident at MGH in Boston
Daniel Zinder, Postdoctoral Researcher (2016 to 2017), now a bioinformatician at Roche
Graham Northrup, Research Assistant (2017), PhD student at the Center for Computational Biology at UC Berkeley
Rohan Dandavati, Research Assistant (2017), now a full stack developer at Google
Rahul Subramanian, PhD student (2015 to 2017), currently an epidemiologist and ORISE Data Science Fellow at NIAID
Colin Kyle, Research Programmer (2016), game developer
Igor Vasiljevic, Research Assistant (2015), currently a PhD student in computer science at the Toyota Technical Institute at Chicago
Lev Tsypin, Research Assistant (2015), now a PhD student in systems biology at Caltech