First flu infections determine susceptibility throughout life, and potentially vaccine effectiveness. New preprint
by Phil (and a parallel study
by Katie Gostic, who joins the lab this fall).
to model the longitudinal development of immunity to influenza (with collaborator Aubree Gordon
at U. Michigan) begins!
We say good-bye to Ed, who is heading off to found his own startup to save us from Facebook and all the rest. His statistical and programming advice will live on in our models forever.
in Nature Communications
shows how immune memory shapes protection to influenza in adults and children. Bonuses: Estimation of imprinting effects, epidemic sizes, household transmission, & more!
Sarah eventually checks her text messages and discovers she has been awarded tenure!
Ed returns to the fold to model the development of immunity to flu. True to form, he immediately proposes provocatively simple models. It's good to have him back!
Congratulations to Frank on his successful PhD defense! We are happy to have him around another few months before he returns to medical school.
Marcos has been awarded a William Rainey Harper Fellowship, one of the University of Chicago's highest honors. Congratulations, Marcos!
Congratulations to Sylvia for successfully defending her PhD thesis!
Phil Arevalo joins the lab as a postdoctoral researcher. Welcome, Phil!
Rohan Dandavati and Graham Northrup join the Cobey lab. Welcome!
Kangchon Kim joins the lab as a postdoc! Welcome, Kangchon!
Scott Hensley and Sarah propose that many patterns in influenza immunology make sense in light of original sin
was awarded an NIH F30 grant. Congratulations, Sylvia!
Frank and Marcos both successfully defended their dissertation proposals this week and are now PhD candidates. Congratulations!
Sarah gives a seminar in the NYU Department of Biology.
Sarah and Ed's new paper
shows that causal inference using state-space reconstruction is unreliable in natural systems.
Daniel Zinder joins the lab as a postdoc! Welcome, Daniel!
Colin Kyle joins the lab as a research programmer. Welcome, Colin!
Sarah was interviewed on NPR
about influenza's phylogeography and its coevolution with the immune system.
Rahul Subramanian begins his PhD in the lab!
Sarah teaches a 2.5-day course on "Pathogen evolution, selection, and immunity" with Trevor Bedford
at the Statistics and Modeling in Infectious Diseases (SISMID) summer school in Seattle.
Lev Tsypin, a third year undergraduate, begins his summer rotation in the lab! He'll be working with Igor on fitting nonlinear dynamics.
joins the lab to investigate methods to fit stochastic, nonlinear dynamical models.
Sarah presents at the RAPIDD workshop "Modeling and predicting influenza phenotypes" at Cambridge University.
Congratulations to Sylvia for successfully defending her thesis proposal!
Congratulations to Marcos, whose paper
has just been published in Ecology Letters
Our new paper
argues that pathogens evolve in a more complex immune environment than most models assume, and the differences matter.
Sarah gives a talk at the J. Craig Venter Institute.
Sarah and Jack Gilbert
receive a $75,000 seed grant from the DoE to develop methods to infer pathogen interactions.
Sarah gives a talk at Swarthmore.
joins the lab to work on the phylogeography of influenza!